Identifying Stage-Specific Genes by Combining
Information from two types of Oligonucleotide Arrays
(CAMDA 04 dataset)
Source Codes
The analytic code for gene expression analysis (
R code
)
The analytic code for Gene Ontology analysis (
Perl script
)
The source codes for predicting protein interaction pairs (
Perl script
) and generating simulations (
Perl script
)
Analysis on the DeRisi Data and the Winzeler Data
The list of genes that are not expressed across the asexual blood stages along with their intensities (
731 genes
).
The list of genes that are expressed across the asexual blood stages along with their intensities (
3582 genes
).
The list of genes that are constituively expressed across the asexual blood stages based on DeRisi data (
665 genes
).
The intensities of each "invariant" gene obtained from the DeRisi data and the Winzeler data (
Sync1
and
Sync2
).
Sporozoite/Gametocyte Specific Genes
Download the list of genes that are not expressed across blood stages but expressed in sporozoite stage (
408 genes
).
Download the list of genes that are constituively expressed across blood stages and upregulated in sporozoite stage (
118 genes
).
Download the list of genes that are not expressed across blood stages but expressed in gametocyte stage (
335 genes
).
Download the list of genes that are constituively expressed across blood stages and upregulated in gametocyte stage (
124 genes
).
Gene Ontology Analysis of Sporozoite/Gametocyte Specific Genes
Molecular Function
Genes that are not expressed across blood stages but expressed in sporozoite stage (
TXT file
).
Genes that are constituively expressed across blood stages and upregulated in sporozoite stage (
TXT file
).
Genes that are not expressed across blood stages but expressed in gametocyte stage (
TXT file
).
Genes that are constituively expressed across blood stages and upregulated in gametocyte stage (
TXT file
).
All Genes (
TXT file
).
Result Summary (
EXCEL file
).
Biological Process
Genes that are not expressed across blood stages but expressed in sporozoite stage (
TXT file
).
Genes that are constituively expressed across blood stages and upregulated in sporozoite stage (
TXT file
).
Genes that are not expressed across blood stages but expressed in gametocyte stage (
TXT file
).
Genes that are constituively expressed across blood stages and upregulated in gametocyte stage (
TXT file
).
All Genes (
TXT file
).
Result Summary (
EXCEL file
).
Cellular Component
Genes that are not expressed across blood stages but expressed in sporozoite stage (
TXT file
).
Genes that are constituively expressed across blood stages and upregulated in sporozoite stage (
TXT file
).
Genes that are not expressed across blood stages but expressed in gametocyte stage (
TXT file
).
Genes that are constituively expressed across blood stages and upregulated in gametocyte stage (
TXT file
).
All Genes (
TXT file
).
Result Summary (
EXCEL file
).
Analysis on Winzeler's result
GO analysis according to "molecular function" ontology (
TXT file
,
EXCEL file
)
GO analysis according to "biological process" ontology (
TXT file
,
EXCEL file
)
Correlate Protein Interaction with Gene Expression
Download the list of
P.falciparum
and
S.cerevisiae
ortholog pairs (
TXT file
).
Download the list of protein interaction pairs in
P.falciparum
(
TXT file
).
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Yale University
All Rights Reserved.