Free Download of Our Programs

Computer programs developed in our group
Genetic Linkage Analysis
- LD Mapping with Haplotype Data
A program of mapping disease genes (including location and confidence
interval) by using haplotypes with disease mutation and the haplotypes
without disease mutation (or allele frequencies in normal population).
Related Paper,
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- LD Mapping with Genotype
Data
This is a program to mapping the disease gene
(including location and confidence interval) by using multisite genotype
data of case-control studies.
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- Multiple TDT
a program to do the associate test (TDT type test for nuclear-family
data) using several tightly linked markers simultanously
Related Paper,
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- QSAT
A Program for Quantitative Association Analysis
ReadMe (PDF),
Related Paper,
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- Haplore
A Program for Haplotype Reconstruction in Pedigrees
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Related Paper,
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- Haplore (Solaris version)
ReadMe (PDF),
Related Paper,
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- Haplore (Linux version)
ReadMe (PDF),
Related Paper,
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Pathway Analysis and Visualization
Gene Array Data Analysis
- BCLUST
A program to assess reliability of gene clusters from expression data by
using consensus tree and bootstrap resampling method
ReadMe (PDF),
Related Paper,
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- QAmerge 1.0e
Pooling replicated microarray datasets exported from QuantArray image
analysis software.
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- GPmerge 4.0b
Pooling replicated microarray datasets exported from GenePix Pro image
analysis software.
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- QAnalyzer 1.0
Statistical analysis of QuantArray data, including dye effect adjustment
and ANOVA analysis.
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- QAnalyzer 1.0 LINUX NEW!!!
Statistical analysis of QuantArray data, including dye effect adjustment
and ANOVA analysis.
ReadMe (PDF) ,
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- GProcesser 3.0 NEW!!!!
Statistical analysis of GenePix data, including dye effect adjustment
and ANOVA analysis.
ReadMe (PDF) ,
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- GProcesser 2.0 LINUX NEW!!!!
Statistical analysis of GenePix data, including dye effect adjustment
and ANOVA analysis.
ReadMe (PDF) ,
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Statistical Analysis of human nondisjunction Data
- EM based method
An EM based algorithm to estimate genetic distances and chiasma
distribution for human UPD and trisomy data.
Related Paper,
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- HMM based method
A Hidden Markov model based algorithm to estimate genetic distances
and chiasma distribution for human UPD and trisomy data.
Related Paper,
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Modifier Gene Analysis
- siliColony
A program to estimate the probability that a modifier gene is
responsible for the segregation of phenotypes.
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Last Update November 2, 2006